Publications


2020

Acheampong AK, Shanks C, Chang CY, et al. (2020) EXO70D isoforms mediate selective autophagic degradation of Type-A ARR proteins to regulate cytokinin sensitivity. bioRxiv:938712.

Acheampong AK, Shanks C, Cheng CY, et al. (2020) EXO70D isoforms mediate selective autophagic degradation of type-A ARR proteins to regulate cytokinin sensitivity. PNAS [epub].

Alcântara A, Seitner D, ..., Djamei A (2020) A high-throughput screening method to identify proteins involved in unfolded protein response of the endoplasmic reticulum in plants. Plant Methods 16:4.

Bente H, Foerster AM, Sarazin A, et al. (2020) Polyploidy-associated paramutation in Arabidopsis is determined by small RNAs, temperature, and structure. bioRxiv:2020.10.21.348839.

Bente H, Mittelsten Scheid O, Donà M (2020) Versatile in vitro assay to recognize Cas9-induced mutations. Plant Direct 4(9):e00269.

Borg M, Jacob Y, Susaki D, et al. (2020) Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin. Nature Cell Biology 22(6):621-9.

Bourguet P, Picard CL, Yelagandula R, et al. (2020) The histone variant H2A.W promotes heterochromatin accessibility for efficient DNA methylation in Arabidopsis. bioRxiv:19.998609.

Burns R and Novikova P (2020) Parallel adaptation to climate above the 35th parallel. Mol Ecol [epub].

Burns R, Mandakova T, Jagoda J, et al. (2020) Gradual evolution of allopolyploidy in Arabidopsis suecica. bioRxiv:264432.

Gordon SP, Contreras-Moreira B, Levy JJ, et al. (2020) Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nat Commun 11(1):3670.

Gutierrez-Marcos J, Lee YS, Maple R, et al. (2020) A transposon surveillance mechanism that safeguards plant male fertility during stress. bioRxiv:2020.10.03.324764.

Gutzat R and Mittelsten Scheid O (2020) Preparing Chromatin and RNA from Rare Cell Types with Fluorescence-Activated Nuclear Sorting (FANS). Methods Mol Biol 2093:95-105.

Gutzat R, Rembart K, Nussbaumer T, et al. (2020) Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns. EMBO J [epub] preprint bioRxiv:430447.

Hüther P, Schandry N, ... Becker C (2020) ᴀʀᴀᴅᴇᴇᴘᴏᴘsɪs, an Automated Workflow for Top-View Plant Phenomics using Semantic Segmentation of Leaf States. Plant Cell [epub] preprint  bioRxiv:2020.04.01.018192v1

Incarbone M and Ritzenthaler C (2020) Double-Stranded RNA Pull-Down to Characterize Viral Replication Complexes in Plants. Methods Mol Biol 2166:307-27.

Jahnke M, Moksnes PO2 Olsen JL, et al. (2020) Integrating genetics, biophysical, and demographic insights identifies critical sites for seagrass conservation. Ecol Appl [epub].

Jiang D, Borg M, Lorković ZJ, et al. (2020) The evolution and functional divergence of the histone H2B family in plants. PLoS Genet 16(7):e1008964.

Kao P and Nodine MD (2020) Profiling Transcriptomes of Manually Dissected Arabidopsis Embryos. Methods Mol Biol 2122:113-26.

Kao P and Nodine M (2020) Application of expansion microscopy on developing Arabidopsis seeds. Methods Cell Biol [epub].

Karaaslan ES, Wang N, Faiß N, et al. (2020) Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure. Nat Plants [epub].

Kreutz C, Can NS, Bruening RS, et al. (2020) A Blind and Independent Benchmark Study for Detecting Differentially Methylated Regions in Plants. Bioinformatics (epub).

Lee HS and Belkhadir Y (2020) Damage Control: Cellular Logic in the Root Immune Response. Cell Host Microbe 27(3):308-10.

Loppin B and Berger F (2020) Histone Variants: The Nexus of Developmental Decisions and Epigenetic Memory. Annu Rev Genet [epub].

Luo J, Wei C, Liu H, et al. (2020) MaizeCUBIC: A Comprehensive Variation Database for a Maize Synthetic Population. Database (Oxford) [epub].

Ma J, Liang Z, Zhao J, et al. (2020) Friendly regulates membrane depolarization induced mitophagy in Arabidopsis. bioRxiv:2020.07.12.198424.

Montgomery SA, Tanizawa Y, Galik B, et al. (2020) Chromatin organization in early land plants reveals an ancestral association between H3K27me3, transposons, and constitutive heterochromatin. Curr Biol [epub].

Morales L, Repka AC, Swarts KL, et al. (2020) Genotypic and phenotypic characterization of a large, diverse population of maize near-isogenic lines. Plant J 103(3):1246-55.

Páldi K, Mosiolek M, Nodine MD (2020) Small RNA In Situ Hybridizations on Sections of Arabidopsis Embryos. Methods Mol Biol 2122:87-99.

Pandey P, Leary AY, Tümtas Y, et al. (2020) The Irish potato famine pathogen subverts host vesicle trafficking to channel starvation-induced autophagy to the pathogen interface. bioRxiv:2020.03.20.000117.

Papareddy R, Páldi K, ... Nodine MD (2020) Chromatin Regulates Bipartite-Classified Small RNA Expression to Maintain Epigenome Homeostasis in Arabidopsis. bioRxiv:076885.

Papareddy RK, Páldi K, ..., Nodine MD (2020) Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis. Genome Biol 21(1):251. 

Petre B, Contreras MP, Bozkurt TO, et al. (2020) Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process. bioRxiv:2020.09.24.308585.

Ramos-Cruz D and Becker C (2020) A Critical Guide for Studies on Epigenetic Inheritance in Plants. Methods Mol Biol 2093:261-70.

Raxwal VK, Simpson CG, Gloggnitzer J, et al. (2020) Nonsense-mediated RNA Decay Factor UPF1 is Critical for Post-transcriptional and Post-translational Gene Regulation in Arabidopsis. Plant Cell [epub].

Rodriguez E, Chevalier J, Olsen J, et al. (2020) Autophagy mediates temporary reprogramming and dedifferentiation in plant somatic cells. EMBO J [epub].

Shah N, Wakabayashi T, Kawamura Y, et al. (2020) Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan. Nat Commun 11(1):253.

Stephani M, Picchianti L, ..., Dagdas Y (2020) A cross-kingdom conserved ER-phagy receptor maintains endoplasmic reticulum homeostasis during stress. eLife:58396 preprint bioRxiv:995316.

Tsuchimatsu T, Kakui H, Yamazaki M, et al. (2020) Adaptive Reduction of Male Gamete Number in the Selfing Plant Arabidopsis Thaliana. Nat Commun 11(1):2885.

Weiszmann J, Clauw P, Jagoda J, et al. (2020)  Plasticity of the primary metabolome in 241 cold grown Arabidopsis thaliana accessions and its relation to natural habitat temperature. bioRxiv:2020.09.24.311092.

Yan A, Borg B, Berger F, et al. (2020) The Atypical Histone Variant H3.15 Promotes Callus Formation in Arabidopsis thaliana. Development [epub].

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