Publications


2020

Acheampong AK, Shanks C, Cheng CY, et al. (2020) EXO70D isoforms mediate selective autophagic degradation of type-A ARR proteins to regulate cytokinin sensitivity. PNAS 117(43):27034-43 preprint bioRxiv:938712.

Alcântara A, Seitner D, ..., Djamei A (2020) A high-throughput screening method to identify proteins involved in unfolded protein response of the endoplasmic reticulum in plants. Plant Methods 16:4.

Bente H, Mittelsten Scheid O, Donà M (2020) Versatile in vitro assay to recognize Cas9-induced mutations. Plant Direct 4(9):e00269.

Borg M, Jacob Y, Susaki D, et al. (2020) Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin. Nature Cell Biology 22(6):621-9.

Burns R and Novikova P (2020) Parallel adaptation to climate above the 35th parallel. Mol Ecol [epub].

Darino M, Chia KS, ..., Djamei A. (2020) Ustilago maydis effector Jsi1 interacts with Topless corepressor, hijacking plant JA/ET signaling. New Phytol 229(6):3393-407.

Gordon SP, Contreras-Moreira B, Levy JJ, et al. (2020) Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nat Commun 11(1):3670.

Gutierrez-Marcos J, Lee YS, Maple R, et al. (2020) A transposon surveillance mechanism that safeguards plant male fertility during stress. bioRxiv:2020.10.03.324764.

Gutzat R and Mittelsten Scheid O (2020) Preparing Chromatin and RNA from Rare Cell Types with Fluorescence-Activated Nuclear Sorting (FANS). Methods Mol Biol 2093:95-105.

Gutzat R, Rembart K, Nussbaumer T, et al. (2020) Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns. EMBO J 39(20):e103667 preprint bioRxiv:430447.

Hajný J, Prát T, Rydza N, et al. (2020) Receptor kinase module targets PIN-dependent auxin transport during canalization. Science 370(6516):550-7.

Hüther P, Schandry N, ... Becker C (2020) ᴀʀᴀᴅᴇᴇᴘᴏᴘsɪs, an Automated Workflow for Top-View Plant Phenomics using Semantic Segmentation of Leaf States. Plant Cell 32(12):3674-88 preprint  bioRxiv:2020.04.01.018192v1

Incarbone M and Ritzenthaler C (2020) Double-Stranded RNA Pull-Down to Characterize Viral Replication Complexes in Plants. Methods Mol Biol 2166:307-27.

Jahnke M, Moksnes PO2 Olsen JL, et al. (2020) Integrating genetics, biophysical, and demographic insights identifies critical sites for seagrass conservation. Ecol Appl 30(6):e02121.

Jiang D, Borg M, Lorković ZJ, et al. (2020) The evolution and functional divergence of the histone H2B family in plants. PLoS Genet 16(7):e1008964.

Kao P and Nodine MD (2020) Profiling Transcriptomes of Manually Dissected Arabidopsis Embryos. Methods Mol Biol 2122:113-26.

Kao P and Nodine M (2020) Application of expansion microscopy on developing Arabidopsis seeds. Methods Cell Biol 161:181-195.

Karaaslan ES, Wang N, Faiß N, et al. (2020) Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure. Nat Plants 6(10):1250-61.

Kreutz C, Can NS, Bruening RS, et al. (2020) A Blind and Independent Benchmark Study for Detecting Differentially Methylated Regions in Plants. Bioinformatics 36(11):3314-21.

Leca I, Phillips AW, Hofer I, et al. (2020) A proteomic survey of microtubule-associated proteins in a R402H TUBA1A mutant mouse. PLoS Genet 16(11):e1009104.

Lee HS and Belkhadir Y (2020) Damage Control: Cellular Logic in the Root Immune Response. Cell Host Microbe 27(3):308-10.

Lei B, Capella M, Montgomery SA, et al. (2020) A Synthetic Approach to Reconstruct the Evolutionary and Functional Innovations of the Plant Histone Variant H2A.W. Curr Biol 31(1):182-91.

Loppin B and Berger F (2020) Histone Variants: The Nexus of Developmental Decisions and Epigenetic Memory. Annu Rev Genet 54:121-49.

Luo J, Wei C, Liu H, et al. (2020) MaizeCUBIC: A Comprehensive Variation Database for a Maize Synthetic Population. Database (Oxford) 2020:baaa044.

Montgomery SA, Tanizawa Y, Galik B, et al. (2020) Chromatin organization in early land plants reveals an ancestral association between H3K27me3, transposons, and constitutive heterochromatin. Curr Biol 30(4):573-588.e7.

Morales L, Repka AC, Swarts KL, et al. (2020) Genotypic and phenotypic characterization of a large, diverse population of maize near-isogenic lines. Plant J 103(3):1246-55.

Nodine MD (2020) Parental contributions to early embryos. Nat Plants 6(11):1308.

Páldi K, Mosiolek M, Nodine MD (2020) Small RNA In Situ Hybridizations on Sections of Arabidopsis Embryos. Methods Mol Biol 2122:87-99.

Papareddy RK, Páldi K, ..., Nodine MD (2020) Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis. Genome Biol 21(1):251 preprint bioRxiv:076885

Ramos-Cruz D and Becker C (2020) A Critical Guide for Studies on Epigenetic Inheritance in Plants. Methods Mol Biol 2093:261-70.

Raxwal VK, Simpson CG, Gloggnitzer J, et al. (2020) Nonsense-mediated RNA Decay Factor UPF1 is Critical for Post-transcriptional and Post-translational Gene Regulation in Arabidopsis. Plant Cell 32(9):2725-41.

Rodriguez E, Chevalier J, Olsen J, et al. (2020) Autophagy mediates temporary reprogramming and dedifferentiation in plant somatic cells. EMBO J 39(4):e103315 preprint bioRxiv:747410.

Shah N, Wakabayashi T, Kawamura Y, et al. (2020) Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan. Nat Commun 11(1):253.

Shi D, Jouannet V, Agustí J, et al. (2020) Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures. Plant Cell 33(2):200-23.

Stephani M, Picchianti L, ..., Dagdas Y (2020) A cross-kingdom conserved ER-phagy receptor maintains endoplasmic reticulum homeostasis during stress. eLife:58396 preprint bioRxiv:995316.

Stephani M, Picchianti L, Dagdas Y (2020) C53 is a cross-kingdom conserved reticulophagy receptor that bridges the gap betweenselective autophagy and ribosome stalling at the endoplasmic reticulum. Autophagy 17(2):586-7.

To TK, Nishizawa Y, Inagaki S, et al. (2020) RNA interference-independent reprogramming of DNA methylation in Arabidopsis. Nat Plants 6(12):1455-67.

Tsuchimatsu T, Kakui H, Yamazaki M, et al. (2020) Adaptive Reduction of Male Gamete Number in the Selfing Plant Arabidopsis Thaliana. Nat Commun 11(1):2885 preprin bioRxiv:272757.

Vainonen JP, Shapiguzov A, Krasensky-Wrzaczek J, et al. (2020) Arabidopsis Poly(ADP-ribose)-binding protein RCD1 interacts with Photoregulatory Protein Kinases in nuclear bodies. bioRxiv:2020.07.02.184937.

Wang Y, Tao Z, Wang W, et al. (2020) Molecular variation in a functionally divergent homolog of FCA regulates flowering time in Arabidopsis thaliana. Nat Commun 11(1):5830.

Weiszmann J, Clauw P, Jagoda J, et al. (2020)  Plasticity of the primary metabolome in 241 cold grown Arabidopsis thaliana accessions and its relation to natural habitat temperature. bioRxiv:2020.09.24.311092.

Yan A, Borg B, Berger F, et al. (2020) The Atypical Histone Variant H3.15 Promotes Callus Formation in Arabidopsis thaliana. Development 147(11):dev184895.

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