Publications


2019

Aköz G and Nordborg M (2019) The Aquilegia genome reveals a hybrid origin of core eudicots. Genome Biol 20(1):256 preprint bioRxiv:407973.

Alcântara A, Bosch J, ..., Djamei A (2019) Systematic Y2H Screening Reveals Extensive Effector-Complex Formation. Front Plant Sci 10:1437.

Barton N, Hermisson J, Nordborg M (2019) Why structure matters. eLife:45380.

Benkova E and Dagdas Y (2019) Editorial overview: Cell biology in the era of omics? Curr Opin Plant Biol 52:A1-2.

Berger F (2019) An ancient antisense-driven RNA switch drives plant sex determination. EMBO J 38(6).

Berger F (2019) Emil Heitz, a true epigenetics pioneer. Nat Rev Mol Cell Biol 20(10):572.

Borg M, Buendía D, Berger F (2019) A simple and robust protocol for immunostaining Arabidopsis pollen nuclei. Plant Reprod 32(1):39-43.

Bosch J, Czedik-Eysenberg A, ..., Djamei A (2019) Two Is Better Than One: Studying Ustilago bromivora-Brachypodium Compatibility by Using a Hybrid Pathogen. Mol Plant Microbe Interact 31(12):1623-34

Bouain N, Korte A, Satbhai SB, et al. (2019) Systems genomics approaches provide new insights into Arabidopsis thaliana root growth regulation under combinatorial mineral nutrient limitation. PLoS Genet:e1008392.

Doblmann J, Dusberger F, Imre R, et al. (2019) apQuant: Accurate Label-Free Quantification by Quality Filtering. J Proteome Res 18(1):535-41.

Drinnenberg IA, Berger F, Elsässer SJ, et al. (2019) EvoChromo: towards a synthesis of chromatin biology and evolution. Development 146(19).

Dumur T, Duncan S, Graumann K, et al. (2019) Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions. Nucleus 10(1):181-212.

Durut N and Mittelsten Scheid O (2019) The Role of Noncoding RNAs in Double-Strand Break Repair. Front Plant Sci 10:1155.

Duszynska D, Vilhjalmsson B, Castillo Bravo R, et al. (2019) Transgenerational effects of inter-ploidy cross direction on reproduction and F2 seed development of Arabidopsis thaliana F1 hybrid triploids. Plant Reprod 32(3):275-89.

Giovannetti M, Göschl C, ..., Busch W (2019) Identification of novel genes involved in phosphate accumulation in Lotus japonicus through Genome Wide Association mapping of root system architecture and anion content. PLoS Genet 15(12):e1008126.

Han X, Altegoer F, Steinchen W, et al. (2019) A kiwellin disarms the metabolic activity of a secreted fungal virulence factor. Nature 565(7741):650-3.

Hisanaga T, Yamaoka S, Kawashima T, et al. (2019) Building new insights in plant gametogenesis from an evolutionary perspective. Nat Plants 5:663-9.

Holzmann J, Politi AZ, Nagasaka K, et al. (2019) Absolute quantification of cohesin, CTCF and their regulators in human cells. Elife:46269.

Kao P and Nodine MD (2019) Transcriptional Activation of Arabidopsis Zygotes Is Required for Initial Cell Divisions. Sci Rep 9(1):17159 preprint bioRxiv:679035.

Kutschera A, Dawid C, Gisch N, et al. (2019) Bacterial medium chain 3-hydroxy fatty acid metabolites trigger immunity in Arabidopsis plants. Science 364(6436):178-81.

Le Goff S, Nur Keçeli B, Jerabkova H, et al. (2019) The H3 histone chaperone NASPSIM 3 escorts CenH3 in Arabidopsis. Plant J [epub].

Li B, Sun L, Huang J, et al. (2019) GSNOR provides plant tolerance to iron toxicity via preventing iron-dependent nitrosative and oxidative cytotoxicity. Nat Commun 10(1):3896.

Liu X, Wu X, Adhikari PB, et al. (2019) Establishment of a novel method for the identification of fertilization defective mutants in Arabidopsis thaliana. Biochem Biophys Res Commun 521(4):928-32.

Luu DD, Joe A, Chen Y, et al. (2019) Biosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor. Proc Natl Acad Sci USA [epub].

Ma Y, Miotk A, Šutiković Z, et al. (2019) WUSCHEL acts as an auxin response rheostat to maintain apical stem cells in Arabidopsis. Nat Commun 10(1):5093.

Marbach F, Rustad CF, Riess A, et al. (2019) The Discovery of a LEMD2-Associated Nuclear Envelopathy with Early Progeroid Appearance Suggests Advanced Applications for AI-Driven Facial Phenotyping. Am J Hum Genet 104(4):749-57.

Mérai Z, Graeber K, Wilhelmsson P, et al. (2019) Aethionema arabicum: a novel model plant to study the light control of seed germination. J Exp Bot 70(12): 3313-28 preprint bioRxiv:470401.

Mittelsten Scheid O (2019) Illuminating (White and) Purple Patches. Plant Cell 31(6):1208-9.

Mott GA, Smakowska-Luzan E, Pasha A, et al. (2019) Map of physical interactions between extracellular domains of Arabidopsis leucine-rich repeat receptor kinases. Sci Data 6:190025.

Nie WF, Lei M, Zhang M, et al. (2019) Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation in Arabidopsis. Proc Natl Acad Sci USA 116(33):16641-50.

Ogura T, Goeschl C, ... Busch W (2019) Root system depth in Arabidopsis is shaped by EXOCYST70A3 via the dynamic modulation of auxin transport. Cell 178(2):400-12.

Omony J, Nussbaumer T, Gutzat R (2019) DNA methylation analysis in plants: review of computational tools and future perspectives. Brief Bioinform [epub].

Plotnikova A, Kellner MJ, ..., Nodine MD (2019) MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis. Plant Cell (epub) preprint bioRxiv:633735.

Rodriguez E, Chevalier J, Olsen J, et al. (2019) Autophagy mediates temporary reprogramming and dedifferentiation in plant somatic cells. bioRxiv:747410.

Ryder L, Dagdas Y, Kershaw M, et al. (2019) A sensor kinase controls turgor-driven plant infection by the rice blast fungus. Nature 574(7778):423-7.

Sasaki E, Kawakatsu T, Ecker JR, et al. (2019) Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana. PLoS Genet 15(12):e1008492 preprint bioRxiv:819516.

Schandry N and Becker C (2019) Allelopathic Plants: Models for Studying Plant–Interkingdom Interactions. Trends Plant Sci 25(2):176-185.

Shi D, Lebovka I, López-Salmerón V, et al. (2019) Bifacial cambium stem cells generate xylem and phloem during radial plant growth. Development 146:e0103.

Slovak R, Setzer C, Roiuk M, et al. (2019) Ribosome assembly factor Adenylate Kinase 6 maintains cell proliferation and cell size homeostasis during root growth. New Phytol 225(5):2064-76.

Stephani M and Dagdas Y (2019) Plant Selective Autophagy - Still an uncharted territory with a lot of hidden gems. J Mol Biol [epub].

Stieger CE, Doppler P, Mechtler K (2019) Optimized Fragmentation Improves the Identification of Peptides Cross-Linked by MS-Cleavable Reagents. J Proteome Res 18(3):1363-70.

Togninalli M, Seren Ü, Freudenthal J, et al. (2019) AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana. Nucleic Acid Res 48(D1):D1063-8.

Uhse S, Pflug FG, ... Djamei A (2019) Insertion Pool Sequencing for Insertional Mutant Analysis in Complex Host-Microbe Interactions. Curr Protoc Plant Biol 4(3):e20097.

Watson JM, Trieb J, Troestl M, et al. (2019) A hypomorphic allele of telomerase reverse transcriptase uncovers the minimal functional length of telomeres in Arabidopsis. bioRxiv:520163.

Xiao Y, Stegmann M, Han Z, et al. (2019) Mechanisms of RALF peptide perception by a heterotypic receptor complex. Nature 572(7768):270-4.

Zess EK, Jensen C, ... Dagdas Y (2019) N-terminal β-strand underpins biochemical specialization of an ATG8 isoform. PLoS Biol:3000373 preprint:  bioRxiv:453563.

Zuo Z, Roux ME, Rodriguez E, et al. (2019) mRNA decapping machinery targets transcripts of the LBD3/ASL9 transcription factor to authorize formation of apical hook and lateral roots in Arabidopsis. bioRxiv:834465​​​​​​​.

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