Publications


2021

Ageeva-Kieferle A, Georgii E, Winkler B, et al. (2021) Nitric oxide coordinates growth, development, and stress response via histone modification and gene expression. Plant Physiol [epub].

Alonso-Díaz A, Satbhai SB, de Pedro-Jové R, et al. (2021) A genome-wide association study unravels cytokinin as a major component in the root defense responses against Ralstonia solanacearum. J Exp Bot 72(7):2727-40.

Arribas-Hernandez L, Rennie S, Koester T, et al. (2021) Principles of mRNA targeting and regulation via the Arabidopsis m6A-binding proteins ECT2 and ECT3. bioRxiv:2021.04.18.440342.

Bente H, Foerster AM, Lettner N, et al. (2020) Polyploidy-associated paramutation in Arabidopsis is determined by small RNAs, temperature, and allele structure. PLoS Genet 17(3):e1009444 preprint bioRxiv:2020.10.21.348839.

Borg M, Jiang D, Berger F (2021) Histone variants take center stage in shaping the epigenome. Curr Opin Plant Biol 61:101991.

Borg M, Papareddy RK, Dombey R, et al. (2021) Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis. Elife 10:e61894.

Bourguet P, Picard CL, Yelagandula R, et al. (2021) The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation. Nat Commun 12(1):2683.

Bradamante G, Mittelsten Scheid O, Incarbone M (2021) Under siege: virus control in plant meristems and progeny. Plant Cell [epub].

Campos ACAL, van Dijk WFA, Ramakrishna P, et al. (2021) 1,135 ionomes reveals the global pattern of leaf and seed mineral nutrient and trace element diversity in Arabidopsis thaliana. Plant J [epub].

Capitao C, Tanasa S Fulnecek J, et al. (2021) A CENH3 mutation promotes meiotic exit and restores fertility in SMG7-deficient Arabidopsis. bioRxiv:2021.04.08.439068.

Colaianni NR, Parys K, Lee HS, et al. (2021) A complex immune response to flagellin epitope variation in commensal communities. Cell Host Microbe [epub].

Dorfer V, Strobl M, Winkler S, et al. (2021) MS Amanda 2.0: Advancements of the Standalone Implementation. Rapid Commun Mass Spectrom [epub].

Fernandez-Pozo N, Metz T, Chandler JO, et al. (2021) Aethionema arabicum genome annotation using PacBio full-length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research. Plant J [epub].

Hacquard T, Clavel M, Baldrich P, et al. (2021) The Arabidopsis F-box protein FBW2 degrades AGO1 to avoid spurious loading of illegitimate small RNA. bioRxiv:2021.03.24.436811.

Hartlmayr D, Ctortecka C, Seth A, et al. (2021) An automated workflow for label-free and multiplexed single cell proteomics sample preparation at unprecedented sensitivity. bioRxiv:2021.04.14.439828.

Hetherington AJ, Bridson SL, Jones AL, et al. (2021) An evidence-based 3D reconstruction of Asteroxylon mackiei the most complex plant preserved from the Rhynie chert. bioRxiv:2021.04.11.439326.

Hu Y, Colantonio V, Müller BSF, et al. (2021) Genome assembly and population genomic analysis provide insights into the evolution of modern sweet corn. Nat Commun 12(1):1227.

Kao P, Schon MA, ..., Nodine MD (2021) Gene Expression Variation in Arabidopsis Embryos at Single-Nucleus Resolution. bioRxiv:2021.03.26.437151.

Katz E, Li JJ, Jaegle B, et al. (2021) Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. eLife 10:e67784.

Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, et al. (2021) Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy [epub].

Lee DH, Lee HS, Belkhadir Y (2021) Coding of plant immune signals by surface receptors. Curr Opin Plant Biol [epub].

Lee YS, Maple R, Dürr J, et al. (2021) A transposon surveillance mechanism that safeguards plant male fertility during stress. Nat Plants [epub].

Liang Y, Liu HJ, Yan J, et al. (2021) Natural Variation in Crops: Realized Understanding, Continuing Promise. Annu Rev Plant Biol [epub].

Lopez-Arboleda WA, Reinert S, Nordborg M, et al. (2021) Global genetic heterogeneity in adaptive traits. bioRxiv:2021.02.26.433043.

Ma J, Liang Z, Zhao J, et al. (2021) Friendly mediates membrane depolarization-induced mitophagy in Arabidopsis. Curr Biol [epub].

Macovei A, Rubio-Somoza I, Paiva JAP, et al. (2021) Editorial: MicroRNA Signatures in Plant Genome Stability and Genotoxic Stress. Front Plant Sci 12:683302.

Montgomery SA, Berger F (2021) The evolution of imprinting in plants: beyond the seed. Plant Reprod [epub].

Moro B, Kisielow M, Borrero VB, et a. (2021) Nuclear RNA purification by flow cytometry to study nuclear processes in plants. STAR Protoc 2(1):100320.

Naumann C, Heisters M, Brandt W, et al. (2021) Bacterial-type plant ferroxidases tune local phosphate sensing in root development. bioRxiv:2021.03.19.436157.

Navarrete F, Gallei M, Kornienko AE, et al. (2021) TOPLESS promotes plant immunity by repressing auxin signaling and is targeted by the fungal effector Naked1. bioRxiv:2021.05.04.442566.

Osakabe A, Jamge B, Axelsson E, et al. (2021) The chromatin remodeler DDM1 prevents transposon mobility through deposition of histone variant H2A.W. Nat Cell Biol 23(4):391-400.

Papareddy RK and Nodine MD (2021) Plant Epigenetics: Propelling DNA Methylation Variation across the Cell Cycle. Curr Biol 31(3):R129-31.

Papareddy RK, Páldi K, Smolka AD, et al. (2021) Repression of CHROMOMETHYLASE 3 Prevents Epigenetic Collateral Damage in Arabidopsis. bioRxiv:2021.04.14.439682

Parys K, Colaianni NR, ..., Belkhadir Y (2021) Signatures of antagonistic pleiotropy in a bacterial flagellin epitope. Cell Host Microbe 29(4):620-34.

Petre B, Contreras MP, Bozkurt TO, et al. (2021) Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process. Plant Cell [epub].

Pirklbauer GJ, Stieger CE, Matzinger M, et al. (2021) MS Annika: A New Cross-Linking Search Engine. J Proteome Res [epub].

Platre MP, Satbhai S, Brent L, et al. (2021) The receptor kinase SRF3 coordinates iron-level and flagellin dependent defense and growth responses in plants. bioRxiv:2021.04.26.441470.

Safaeizadeh M, Boller T, Becker C (2021) Transcriptomic profiling uncovers novel players in innate immunity in Arabidopsis thaliana. bioRxiv:2021.01.02.425067.
 

Sasaki E, Köcher T, Filiault D, et al. (2021) Revisiting a GWAS peak in Arabidopsis thaliana reveals possible confounding by genetic heterogeneity. bioRxiv:2021.02.03.429533.

Schandry N, Jandrasits K, ..., Becker C (2021) Plant-derived benzoxazinoids act as antibiotics and shape bacterial communities. bioRxiv:2021.01.12.425818.

Schmücker A, Lei B, Lorković ZJ, et al. (2021) Crosstalk between H2A variant-specific modifications impacts vital cell functions. bioRxiv:2021.01.14.426637v2.

Schmücker A, Lei B, Lorković ZJ, et al. (2021) Crosstalk between H2A variant-specific modifications impacts vital cell functions. PLoS Genet 17(6):e1009601.

Schon M, Baxter C, Xu C, et al. (2021) Antagonistic activities of cotranscriptional regulators within an early developmental window set FLC expression level. PNAS 118 (17) e2102753118.

Serra Serra N, Shanmuganathan R, Becker C (2021) Allelopathy in rice: a story on momilactones, kin recognition, and weed management. J Exp Bot [epub].

Stegmann M, Zecua-Ramirez P, Ludwig C, et al. (2021) RGI-GOLVEN signalling promotes FLS2 abundance to regulate plant immunity. bioRxiv:2021.01.29.428839.

Stejskal K, Op de Beeck J, Dürnberger G, et al. (2021) Ultra-sensitive nanoLC-MS of sub nanogram protein samples using second generation micro pillar array LC technology with Orbitrap Exploris 480 and FAIMS PRO. bioRxiv:2021.02.10.430648.

Stejskal K, Op de Beeck J, Dürnberger G, et al. (2021) Ultrasensitive NanoLC-MS of Subnanogram Protein Samples Using Second Generation Micropillar Array LC Technology with Orbitrap Exploris 480 and FAIMS PRO. Anal Chem [epub].

Swarts K, Bauer E, Glaubitz JC, et al. (2021) Joint analysis of days to flowering reveals independent temperate adaptations in maize. Heredity (Edinb) [epub].

Vergara D, Huscher EL, Keepers KG, et al. (2021) Genomic evidence that governmentally produced Cannabis sativa poorly represents genetic variation available in state markets. bioRxiv:2021.02.13.431041.

Walker J, Zhang J, Liu Y, et al. (2021) Extensive N4 cytosine methylation is essential for Marchantia sperm function. bioRxiv:2021.02.12.428880.

Wang L, Jia X, Zhang Y, et al. (2021) Loss of two families of SPX domain-containing proteins required for vacuolar polyphosphate accumulation coincides with the transition to phosphate storage in green plants. Mol Plant [epub].

Wu J, Michaeli S, Picchianti L, et al. (2021) ATI1 (ATG8-interacting protein 1) and ATI2 define a plant starvation-induced reticulophagy pathway and serve as MSBP1/MAPR5 cargo receptors. Autophagy [epub].

Yelagandula R, Bykov A, Vogt A, et al. (2021) Multiplexed detection of SARS-CoV-2 and other respiratory infections in high throughput by SARSeq. Nat Commun 12(1):3132.

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