Publications


2021

Abella-Gutiérrez J, Touchan R, Boehm J, et al. (2021) Oceanic Influence on Chiricahua Mountains Drought Observed in a 383-Year Douglas-Fir Reconstruction. Tree-Ring Research 77(2):63-73.

Ageeva-Kieferle A, Georgii E, Winkler B, et al. (2021) Nitric oxide coordinates growth, development, and stress response via histone modification and gene expression. Plant Physiol [epub].

Alonso-Díaz A, Satbhai SB, de Pedro-Jové R, et al. (2021) A genome-wide association study unravels cytokinin as a major component in the root defense responses against Ralstonia solanacearum. J Exp Bot 72(7):2727-40.

Arribas-Hernandez L, Rennie S, Koester T, et al. (2021) Principles of mRNA targeting and regulation via the Arabidopsis m6A-binding proteins ECT2 and ECT3. bioRxiv:2021.04.18.440342.

Bente H, Foerster AM, Lettner N, et al. (2020) Polyploidy-associated paramutation in Arabidopsis is determined by small RNAs, temperature, and allele structure. PLoS Genet 17(3):e1009444 preprint bioRxiv:2020.10.21.348839.

Borg M, Jiang D, Berger F (2021) Histone variants take center stage in shaping the epigenome. Curr Opin Plant Biol 61:101991.

Borg M, Papareddy RK, Dombey R, et al. (2021) Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis. Elife 10:e61894.

Bourguet P, Picard CL, Yelagandula R, et al. (2021) The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation. Nat Commun 12(1):2683 preprint bioRxiv:19.998609.

Bradamante G, Mittelsten Scheid O, Incarbone M (2021) Under siege: virus control in plant meristems and progeny. Plant Cell [epub].

Brodersen P, Arribas-Hernández L, ..., Nodine MD (2021)  The Arabidopsis m6A-binding proteins ECT2 and ECT3 bind largely overlapping mRNA target sets and influence target mRNA abundance, not alternative polyadenylation. bioRxiv:2021.08.01.454660.

Campos ACAL, van Dijk WFA, Ramakrishna P, et al. (2021) 1,135 ionomes reveals the global pattern of leaf and seed mineral nutrient and trace element diversity in Arabidopsis thaliana. Plant J 106(2):536-54 preprint bioRxiv:2020.11.09.373282.

Capitao C, Tanasa S Fulnecek J, et al. (2021) A CENH3 mutation promotes meiotic exit and restores fertility in SMG7-deficient Arabidopsis. bioRxiv:2021.04.08.439068.

Chiva C, Mendes Maia T, Panse C, et al. (2021) Quality standards in proteomics research facilities: Common standards and quality procedures are essential for proteomics facilities and their users. EMBO Rep 22(6):e52626.

Clavel M and Dagdas Y (2021) Proteasome and selective autophagy: Brothers-in-arms for organelle quality control. Curr Opin Plant Biol [epub].

Colaianni NR, Parys K, Lee HS, et al. (2021) A complex immune response to flagellin epitope variation in commensal communities. Cell Host Microbe [epub].

De la Concepción JC, Benjumea JV, Bialas A, et al. (2021) Functional diversification gave rise to allelic specialization in a rice NLR immune receptor pair. bioRxiv:2021.06.25.449940.

Déléris A, Berger F, Duharcourt S (2021) Role of Polycomb in the control of transposable elements. Trends Genet [epub].

Dorfer V, Strobl M, Winkler S, et al. (2021) MS Amanda 2.0: Advancements of the Standalone Implementation. Rapid Commun Mass Spectrom [epub].

Doumane M, Lebecq A, Colin L, et al. (2021) Inducible depletion of PI(4,5)P2 by the synthetic iDePP system in Arabidopsis. Nat Plants 7(5):587-97.

Ellis TJ, Postma FM, Oakley CG, et al. (2021) Life-history trade-offs and the genetic basis of fitness in Arabidopsis thaliana. Mol Ecol 30(12):2846-58.

Fernandez-Pozo N, Metz T, Chandler JO, et al. (2021) Aethionema arabicum genome annotation using PacBio full-length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research. Plant J 106(1):275-93.

Hacquard T, Clavel M, Baldrich P, et al. (2021) The Arabidopsis F-box protein FBW2 degrades AGO1 to avoid spurious loading of illegitimate small RNA. bioRxiv:2021.03.24.436811.

Hartlmayr D, Ctortecka C, Seth A, et al. (2021) An automated workflow for label-free and multiplexed single cell proteomics sample preparation at unprecedented sensitivity. bioRxiv:2021.04.14.439828.

Hetherington AJ, Bridson SL, Jones AL, et al. (2021) An evidence-based 3D reconstruction of Asteroxylon mackiei the most complex plant preserved from the Rhynie chert. eLife 10:e69447 preprint bioRxiv:2021.04.11.439326.

Hu Y, Colantonio V, Müller BSF, et al. (2021) Genome assembly and population genomic analysis provide insights into the evolution of modern sweet corn. Nat Commun 12(1):1227.

Julca I, Ferrari C, Flores-Tornero M, et al. (2021) Comparative transcriptomic analysis reveals conserved transcriptional programs underpinning organogenesis and reproduction in land plants. Nat Plants [epub] preprint bioRxiv:2020.10.29.361501.

Kao P, Schon MA, Mosiolek M, et al. (2021) Gene expression variation in arabidopsis embryos at single-nucleus resolution. Development 148(13):dev199589 preprint bioRxiv:2021.03.26.437151.

Katz E, Li JJ, Jaegle B, et al. (2021) Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. eLife 10:e67784.

Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, et al. (2021) Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy [epub].

Lee DH, Lee HS, Belkhadir Y (2021) Coding of plant immune signals by surface receptors. Curr Opin Plant Biol 62:102044.

Lee HS, Choi I, Jeon Y, et al. (2021) Chaperone-like protein DAY plays critical roles in photomorphogenesis. Nat Commun 12(1):4194.
 

Lee YS, Maple R, Dürr J, et al. (2021) A transposon surveillance mechanism that safeguards plant male fertility during stress. Nat Plants [epub].

Liang Y, Liu HJ, Yan J, et al. (2021) Natural Variation in Crops: Realized Understanding, Continuing Promise. Annu Rev Plant Biol 72:357-85.

Lopez-Arboleda WA, Reinert S, Nordborg M, et al. (2021) Global genetic heterogeneity in adaptive traits. Mol Biol Evol [epub] preprint bioRxiv:2021.02.26.433043.

Ma J, Liang Z, Zhao J, et al. (2021) Friendly mediates membrane depolarization-induced mitophagy in Arabidopsis. Curr Biol 31(9):1931-44 preprint bioRxiv:2020.07.12.198424.

Macovei A, Rubio-Somoza I, Paiva JAP, et al. (2021) Editorial: MicroRNA Signatures in Plant Genome Stability and Genotoxic Stress. Front Plant Sci 12:683302.

Matsusaka D, Filiault D, Sanchez DH, et al. (2021) Ultra-High-Density QTL Marker Mapping for Seedling Photomorphogenesis Mediating Arabidopsis Establishment in Southern Patagonia. Front Plant Sci 12:677728

Montgomery SA, Berger F (2021) The evolution of imprinting in plants: beyond the seed. Plant Reprod [epub].

Moro B, Kisielow M, Borrero VB, et a. (2021) Nuclear RNA purification by flow cytometry to study nuclear processes in plants. STAR Protoc 2(1):100320.

Naumann C, Heisters M, Brandt W, et al. (2021) Bacterial-type plant ferroxidases tune local phosphate sensing in root development. bioRxiv:2021.03.19.436157.

Navarrete F, Gallei M, Kornienko AE, et al. (2021) TOPLESS promotes plant immunity by repressing auxin signaling and is targeted by the fungal effector Naked1. bioRxiv:2021.05.04.442566.

Navarrete F, Grujic N, Stirnberg A, et al. (2021) The Pleiades are a cluster of fungal effectors that inhibit host defenses. PLoS Pathog 17(6):e1009641.

Nelson G, Boehm U, Bagley S, et al. (2021) QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy. J Microsc [epub].

Nunn A, Rodriguez-Arevalo I, Tandukar Z, et al. (2021) Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates. bioRxiv:2021.07.30.454478.

Oberlin S, Rajeswaran R, Trasser M, et al. (2021) Innate, translation-dependent silencing of an invasive transposon in Arabidopsis. bioRxiv:2021.06.28.450179.

Osakabe A, Jamge B, Axelsson E, et al. (2021) The chromatin remodeler DDM1 prevents transposon mobility through deposition of histone variant H2A.W. Nat Cell Biol 23(4):391-400.

Pandey P, Leary AY, Tumtas Y, et al. (2021) An oomycete effector subverts host vesicle trafficking to channel starvation-induced autophagy to the pathogen interface. Elife 10:e65285 preprint bioRxiv:2020.03.20.000117.

Papareddy RK and Nodine MD (2021) Plant Epigenetics: Propelling DNA Methylation Variation across the Cell Cycle. Curr Biol 31(3):R129-31.

Papareddy RK, Nodine MD (2021) Plant Epigenetics: Propelling DNA Methylation Variation across the Cell Cycle. Curr Biol 31(3):129-31.

Papareddy RK, Páldi K, Smolka AD, et al. (2021) Repression of CHROMOMETHYLASE 3 Prevents Epigenetic Collateral Damage in Arabidopsis. eLife 10:e69396 preprint bioRxiv:2021.04.14.439682

Parys K, Colaianni NR, ..., Belkhadir Y (2021) Signatures of antagonistic pleiotropy in a bacterial flagellin epitope. Cell Host Microbe 29(4):620-34.

Petre B, Contreras MP, Bozkurt TO, et al. (2021) Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process. Plant Cell 33(5):1447-71 preprint bioRxiv:2020.09.24.308585.

Pirklbauer GJ, Stieger CE, Matzinger M, et al. (2021) MS Annika: A New Cross-Linking Search Engine. J Proteome Res 20(5):2560-9.

Platre MP, Satbhai S, Brent L, et al. (2021) The receptor kinase SRF3 coordinates iron-level and flagellin dependent defense and growth responses in plants. bioRxiv:2021.04.26.441470.

Ramos-Cruz D, Troyee AN, Becker C (2021) Epigenetics in plant organismic interactions. Curr Opin Plant Biol 61:102060.

Roeder AHK, Otegui MS, Dixit R, et al. (2021) Fifteen compelling open questions in plant cell biology. Plant Cell [epub].

Rudolf EE, Hüther P, Forné I, et al. (2021) GSNOR Contributes to Demethylation and Expression of Transposable Elements and Stress-Responsive Genes. Antioxidants (Basel) 10(7):1128.

Safaeizadeh M, Boller T, Becker C (2021) Transcriptomic profiling uncovers novel players in innate immunity in Arabidopsis thaliana. bioRxiv:2021.01.02.425067.

Sasaki E, Köcher T, Filiault D, et al. (2021) Revisiting a GWAS peak in Arabidopsis thaliana reveals possible confounding by genetic heterogeneity. Heredity (Edinb) [epub] preprint bioRxiv:2021.02.03.429533.

Schandry N, Jandrasits K, ..., Becker C (2021) Plant-derived benzoxazinoids act as antibiotics and shape bacterial communities. bioRxiv:2021.01.12.425818.

Schmücker A, Lei B, Lorković ZJ, et al. (2021) Crosstalk between H2A variant-specific modifications impacts vital cell functions. PLoS Genet 17(6):e1009601 preprint bioRxiv:2021.01.14.426637v2.

Schon M, Baxter C, Xu C, et al. (2021) Antagonistic activities of cotranscriptional regulators within an early developmental window set FLC expression level. PNAS 118 (17) e2102753118.

Serra Serra N, Shanmuganathan R, Becker C (2021) Allelopathy in rice: a story on momilactones, kin recognition, and weed management. J Exp Bot 72(11):4022-37.

Stegmann M, Zecua-Ramirez P, Ludwig C, et al. (2021) RGI-GOLVEN signalling promotes FLS2 abundance to regulate plant immunity. bioRxiv:2021.01.29.428839.

Stejskal K, Op de Beeck J, Dürnberger G, et al. (2021) Ultrasensitive NanoLC-MS of Subnanogram Protein Samples Using Second Generation Micropillar Array LC Technology with Orbitrap Exploris 480 and FAIMS PRO. Anal Chem 93(25):8704-10 preprint bioRxiv:2021.02.10.430648.

Swarts K, Bauer E, Glaubitz JC, et al. (2021) Joint analysis of days to flowering reveals independent temperate adaptations in maize. Heredity (Edinb) [epub].

Vergara D, Huscher EL, Keepers KG, et al. (2021) Genomic evidence that governmentally produced Cannabis sativa poorly represents genetic variation available in state markets. bioRxiv:2021.02.13.431041.

Waidmann S, Petutschnig E, Rozhon W, et al. (2021) GSK3-Mediated Phosphorylation of DEK3 Regulates Chromatin Accessibility and Stress Tolerance in Arabidopsis. FEBS J [epub].

Walker J, Zhang J, Liu Y, et al. (2021) Extensive N4 cytosine methylation is essential for Marchantia sperm function. bioRxiv:2021.02.12.428880.

Wang L, Jia X, Zhang Y, et al. (2021) Loss of two families of SPX domain-containing proteins required for vacuolar polyphosphate accumulation coincides with the transition to phosphate storage in green plants. Mol Plant 14(5):8838-46.

Willeit P, Krause R, Lamprecht B, et al. (2021) Prevalence of RT-qPCR-detected SARS-CoV-2 infection at schools: First results from the Austrian School-SARS-CoV-2 prospective cohort study. Lancet Reg Health Eur 5:100086.

Wu J, Michaeli S, Picchianti L, et al. (2021) ATI1 (ATG8-interacting protein 1) and ATI2 define a plant starvation-induced reticulophagy pathway and serve as MSBP1/MAPR5 cargo receptors. Autophagy [epub].

Yelagandula R, Bykov A, Vogt A, et al. (2021) Multiplexed detection of SARS-CoV-2 and other respiratory infections in high throughput by SARSeq. Nat Commun 12(1):3132.

Yost CL, Michas M, Adams KR, et al. (2021) An in situ and morphometric study of maize (Zea mays L.) cob rondel phytoliths from Southwestern North American landraces. Journal of Archaeological Science: Reports 35:102732.

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