List of Publications

YearTitleJournalAuthors
2018Cell-type specific sequencing of microRNAs from complex animal tissues.Nat MethodsAlberti, C., Manzenreither, RA., Sowemimo, I (...) Ameres, SL., Cochella, L.
2007 Mechanistische Analyse des humanen RNA-Interferenz-Effektor-Komplexes BioSpektrumAmeres, S.L.
2005Inducible DNA-loop formation blocks transcriptional activation by an SV40 enhancer.EMBO JAmeres, SL., Drueppel, L., Pfleiderer, K (...) Hillen, W., Berens, C.
2010Riding in silence: a little snowboarding, a lot of small RNAs.SilenceAmeres, SL., Fukunaga, R.
2010Target RNA-directed trimming and tailing of small silencing RNAs.ScienceAmeres, SL., Horwich, MD., Hung, JH (...) Weng, Z., Zamore, PD.
2011Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins.RNAAmeres, SL., Hung, JH., Xu, J., Weng, Z., Zamore, PD.
2007Molecular basis for target RNA recognition and cleavage by human RISC.CellAmeres, SL., Martinez, J., Schroeder, R.
2007RNA chaperone activity of L1 ribosomal proteins: phylogenetic conservation and splicing inhibition.Nucleic Acids ResAmeres, SL., Shcherbakov, D., Nikonova, E (...) Schroeder, R., Semrad, K.
2013Diversifying microRNA sequence and function.Nat Rev Mol Cell BiolAmeres, SL., Zamore, PD.
2022Hijacking of transcriptional condensates by endogenous retroviruses.Nat GenetAsimi, V., Sampath Kumar, A., Niskanen, H (...) Meissner, A., Hnisz, D.
2021Systematic refinement of gene annotations by parsing mRNA 3' end sequencing datasets.Methods EnzymolBhat, P., Burkard, TR., Herzog, VA., Pauli, A., Ameres, SL.
2023SLAMseq resolves the kinetics of maternal and zygotic gene expression during early zebrafish embryogenesis.Cell RepBhat, P., Cabrera-Quio, LE., Herzog, VA (...) Pauli, A., Ameres, SL.
2015Selective Suppression of the Splicing-Mediated MicroRNA Pathway by the Terminal Uridyltransferase Tailor.Mol CellBortolamiol-Becet, D., Hu, F., Jee, D (...) Ameres, SL., Lai, EC.
2022Transcriptome-Wide Profiling of RNA Stability.Methods Mol BiolFasching, N., Petržílek, J., Popitsch, N., Herzog, VA., Ameres, SL.
2011The 3'-to-5' exoribonuclease Nibbler shapes the 3' ends of microRNAs bound to Drosophila Argonaute1.Curr BiolHan, BW., Hung, JH., Weng, Z., Zamore, PD., Ameres, SL.
2016Genetic and mechanistic diversity of piRNA 3'-end formation.NatureHayashi, R., Schnabl, J., Handler, D (...) Ameres, SL., Brennecke, J.
2015Approaching the Golden Fleece a Molecule at a Time: Biophysical Insights into Argonaute-Instructed Nucleic Acid Interactions.Mol CellHerzog, VA., Ameres, SL.
2020Determining mRNA Stability by Metabolic RNA Labeling and Chemical Nucleoside Conversion.Methods Mol BiolHerzog, VA., Fasching, N., Ameres, SL.
2017Thiol-linked alkylation of RNA to assess expression dynamics.Nat MethodsHerzog, VA., Reichholf, B., Neumann, T (...) Zuber, J., Ameres, SL.
2022NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation.Genes DevHuth, M., Santini, L., Galimberti, E (...) Beyer, A., Leeb, M.