Publications


2012

Becker C, Weigel D (2012) Epigenetic variation: origin and transgenerational inheritance. Curr Opin Plant Biol 15(5):562-7.

Belkhadir Y, Jaillais Y, Epple P, et al. (2012). Brassinosteroid modulate the efficiency of the plant immune system. Proc Natl Acad USA 109(1): 297-302. 

Brandt R, Salla-Martret M, Bou-Torrent J, et al. (2012) Genome-wide binding-site analysis of REVOLUTA reveals a link between leaf patterning and light-mediated growth responses. Plant J 72(1):31-42.

Busch W, Moore BT, Martsberger B, et al. (2012)  A microfluidic device and computational platform for high-throughput live imaging of gene expression. Nat Methods 9(11): 1101-6.

Calarco JP, Borges F, Donoghue MT, Van Ex F, Jullien PE, Lopes T, Gardner R, Berger F, Feijó JA, Becker JD, Martienssen RA. (2012) Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA. Cell 151 :194-205.

Chao DY, Silva A, Baxter I, et al. (2012) Genome-Wide Association Studies Identify Heavy Metal ATPase3 as the Primary Determinant of Natural Variation in Leaf Cadmium in Arabidopsis thaliana. PLoS Genet 8(9):e1002923.

Dagdas YF, Yoshino K, Dagdas G, et al. (2012) Septin-mediated plant cell invasion by the rice blast fungus, Magnaporthe oryzae. Science 336(6088):1590-5.

Dal Santo S, Stampfl H, Krasensky J, et al. (2012) Stress-induced GSK3 regulates the redox stress response by phosphorylating glucose-6-phosphate dehydrogenase in Arabidopsis. Plant Cell 24(8):3380-92.

Dinh HQ, Dubin M, Sedlazeck FJ, et al. (2012) Advanced methylome analysis after bisulfite deep sequencing: An example in Arabidopsis. PLoS ONE 7: e41528.

Djamei A, Kahmann R (2012) Ustilago maydis: dissecting the molecular interface between pathogen and plant. PLoS Pathogens 8(11):e1002955.

Gudesblat GE, Schneider-Pizón J, Betti C, et al. (2012) SPEECHLESS integrates brassinosteroid and stomata signalling pathways. Nat Cell Biol 14(5):548-54.

Gutzat R, Mittelsten Scheid O (2012) Epigenetic responses to stress: triple defense? Curr Opin Plant Biol 15:1–6.

Horton MW, Hancock AM, Huang YS, et al. (2012) Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nat Genet 44(2):212-6.

Ibarra C, Feng X, Schoft VK, et al. (2012) Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes. Science 337(6100):1360-4.

Jullien PJ, Susaki D, Yelagandula R, Higashiyama T, and Berger F (2012) DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana. Curr Biol 22: 1825-1830.

Kalyna M, Simpson CG, Syed NH, et al. (2012). Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidosis. Nucleic Acids Res 40:(6) 2454-69.

Kazda A, Zellinger B, Rössler M, et al. (2012) Chromosome end protection by blunt-ended telomeres. Genes Dev 26:1703-13.

Korte A, Vilhjálmsson B, Segura V, et al. (2012) A mixed-model approach for genome-wide association studies of correlated traits in structured populations. Nat Genet 44(9):1066–71.

Krasensky J, Jonak C (2012) Drought, salt and temperature stress-induced metabolic rearrangements and regulatory networks. J Exp Bot 63:1593-1608.

Lee TF, Gurazada SG, Zhai J, et al. (2012). RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats. Epigentics 7(7):781-95.

Lorković Z (2012) MORC proteins and epigenetic regulation. Plant Signal Behav 7(12).

Lorković Z, Naumann U, Matzke AJM, et al. (2012) Involvement of a GHKL ATPase in RNA-directed DNA methylation in Arabidopsis thaliana. Curr Biol 22:933-8.

Marshall A, Aalen RB, Audenaert D, et al. (2012) Tackling drought stress: RECEPTOR-LIKE KINASES present new approaches. Plant Cell 24(6):2262-78.

Nodine MD, Bartel DP (2012) Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos. Nature 482(7383):94-97

Pecinka A, Mittelsten Scheid O (2012) Stress-induced chromatin changes: a critical view on their heritability. Plant Cell Physiol 53:801-8.

Platzer A, Nizhynska V, Long Q (2012) TE-Locate: A Tool to Locate and Group Transposable Element Occurrences Using Paired-End Next-Generation Sequencing Data. Biology 1(2):395-410.

Rasmussen A, De Cuyper C,  Brewer PB, et al. (2012) Strigolactones suppress adventitious rooting in Arabidopsis and pea. Plant Physiol 158(4): 1976-87.

Riehs-Kearnan N, Gloggnitzer J, Dekrout B, et al. (2012) Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response. Nucleic Acids Res 40 (12):5615-24.

Sanchez P, Nehlin L, Greb T (2012) From thin to thick – major transitions during stem development. Trends Plant Sci 17(2):113-121.

Sasaki T, Naumann U, Forai P, et al. (2012) Unusual Case of Apparent Hypermutation in Arabidopsis thaliana. Genetics 192(4):1271-80.

Segura V, Vilhjálmsson B, Platt A, et al. (2012) An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nat Genet 44(7): 825-30.

Seren Ü , Vilhjálmsson BJ, Horton MW, et al. (2012) GWAPP: A Web Application for Genome-Wide Association Mapping in Arabidopsis. Plant Cell 24(12):4793-805.

Vilhjálmsson BJ, Nordborg M (2012) The nature of confounding in genome-wide association studies. Nat Rev Genet 14(1):1-2.

Voigt-Zielinski ML, Piwczyński M, Sharbel TF (2012) Differential effects of polyploidy and diploidy on fitness of apomictic Boechera. Sex. Plant Reprod. 25(2):97-109.

Vu TM, Nakamura M, Calarco JP, Susaki D, Lim PQ, Kinoshita T, Higashiyama T, Martienssen RA, Berger F. (2012) RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis. Development. 140:2953-60.

Wollmann H, Holec S, Alden K, Clarke ND, Jacques P-E, Berger F (2012). Dynamic Deposition of Histone Variant H3.3 Accompanies Developmental Remodeling of the Arabidopsis Transcriptome. Plos Genetics, 10.1371/journal.pgen.1002658.

Yáñez-Cuna JO, Dinh HQ, Kvon EZ, et al. (2012) Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding. Genome Res 22(10):2018-30.

You W, Tyczewska A, Spencer M, et al. (2012) Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana. BMC Plant Biol 12:51.

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