Ortrun Mittelsten Scheid
The following tools are made available by the Mittelsten Scheid group for the benefit of the plant research community:
GM medium protocol
CyMATE is a web application that allows you to perform a quick and comprehensive methylation analysis of cytosine sites in DNA sequences. CyMATE can handle a set of aligned sequences, that is, multiple sequence alignment files of the reference sequence (`master`) and multiple sample sequences (`clones`). It handles bisulfite-converted samples (`clones`) and evaluates the frequency of methylation patterns with respect to a reference sequence (`master`). CyMATE provides for both text and graphical outputs.
If you use results from CyMATE in your published work, please cite:
Hetzl J, Förster AM, Raidl G, Mittelsten Scheid O (2007) CyMATE: a new tool for methylation analysis of plant genomic DNA after bisulfite sequencing. Plant J 51:526-536.
CyMATE is a joint effort of the Mittelsten Scheid Group (GMI) and the Algorithms and Data Structures Group of the Technical University, Vienna.
For questions, reports and comments, contact the author: