Evolution of Chromatin

Research Focus

The transmission, stability, and expression of the eukaryotic genome are controlled by chromatin, which comprises a large array of proteins, including the highly conserved histones. The Berger lab investigates the evolution of chromatin and its impact on processes such as transcription, DNA repair, and meiosis. 

Histones are the most abundant proteins in chromatin and wrap DNA to form nucleosomes, the basic units of chromatin. Nucleosomes are assembled and positioned by dedicated chaperones and ATP-driven remodelers. The deposition, erasure, and recognition of histone variants and histone modifications by different protein complexes are at the heart of the dynamic interactions within chromatin. In the Berger lab, we combine genetics, genomics, and biochemical analyses with synthetic strategies to study chromatin functions using plant models, yeasts, and E. coli.  

Because chromatin is present in all eukaryotes, it must have evolved progressively from the prokaryotic ancestors of eukaryotes, the Asgard archaea. We are defining the organization, biochemical properties, and structure of Asgard archaeal chromatin to propose models for the emergence of chromatin functions during evolution.

In the context of EvoChromo, the Berger lab investigates the evolution of chromatin in Asgard archaea; read more about the project here.

News from the Berger Lab

 

Selected Publications

Wu S, Jandrasits K, Swarts K, et al. (2025) Population genomics of Marchantia polymorpha subsp. ruderalis reveals evidence of climate adaptation. Curr Biol 35(5):970-80.

Osakabe A, Takizawa Y, Horikhosi N, et al. (2024) Molecular and structural basis of the heterochromatin-specific chromatin remodeling activity by Arabidopsis DDM1. Nat Commun 15(1):5187 preprint bioRxiv:2023.07.10.548306.

Harvey ZH, Stevens KM, Warnecke T, et al. (2024) H2A.Z and elongation factor Spt6 form an ancient bridge shaping transcription in eukaryotes. bioRxiv:2024.05.10.593535.

Lorkovic ZJ, Klingenbrunner M, Cho CH, et al. (2024) Identification of plants' functional counterpart of the metazoan mediator of DNA Damage checkpoint 1. EMBO Rep 25(4):1936-61 preprint bioRxiv:2023.05.19.541430.

Murphy PJ and Berger F (2023) The chromatin source-sink hypothesis: a shared mode of chromatin-mediated regulations. Development 150(21):dev201989.

Jamge B, Lorkovic ZJ, Axelsson E, et al. (2023) Histone variants shape chromatin states in Arabidopsis. Elife 12:RP87714 preprint bioRxiv:2023.03.08.531698.

Montgomery SA, Hisanaga T, Wang N, et al. (2022) Polycomb-mediated repression of paternal chromosomes maintains haploid dosage in diploid embryos of Marchantia.  Elife 11:e79258 preprint bioRxiv:2022.02.04.477531.

Osakabe A, Jamge B, Axelsson E, et al. (2021) The chromatin remodeler DDM1 prevents transposon mobility through deposition of histone variant H2A.W. Nat Cell Biol 23(4):391-400.

 

Group members

Group Leader

Bioinformaticians

Senior Research Assistants

Research Assistants

Interns and Master Students