Publications


2018

Ahmed H, Howton TC, Sun Y, Weinberger N, Beklhadir Y, Mukhtar MS (2018) Network biology discovers pathogen contact points in host protein-protein interactomes. Nat Commun 9(1):2312.

Bosch J (2018) Four proposals for a more reliable scientific literature. SAJS 114(3):1-2

Bouain N, Satbhai SB, Korte A, et al. (2018) Natural allelic variation of the AZI1 gene controls root growth under zinc-limiting condition. PLoS Genet 14(4):e1007304.

Brackmann K, Qi J, Gebert M, et al. (2018) Spatial specificity of auxin responses coordinates wood formation. Nat Commun 9(1):875.

Dagdas YF, Pandey P, Tumtas Y, et al. (2018) Host autophagy machinery is diverted to the pathogen interface to mediate focal defense responses against the Irish potato famine pathogen. Elife 2018;7:e37476 preprint bioRxiv:102996.

Dubin MJ, Mittelsten Scheid O, Becker C (2018) Transposons: a blessing curse. Curr Opin Plant Biol 42:23-9.

Exposito-Alonso M, Becker C, Schuenemann VJ, et al. (2018) The rate and potential relevance of new mutations in a colonizing plant lineage. PLoS Genet 14(2):e1007155.

Gantner J, Ordon J, Ilse T, et al. (2018) Peripheral infrastructure vectors and an extended set of plant parts for the Modular Cloning system. PLoS One 13(5):e0197185.

Kurzbauer MT, Pradillo M, Kerzendorfer C et al. (2018) Arabidopsis thaliana FANCD2 Promotes Meiotic Crossover Formation. Plant Cell 30(2):415-28.

Macovei A, Donà M, Carbonera D, et al. (2018) DNA Diffusion Assay Applied to Plant Cells. Methods Mol Biol 1743:107-115.

Nikitaki Z, Holá M, Donà M, et al. (2018) Integrating plant and animal biology for the search of novel DNA damage biomarkers. Mutat Res 775:21-38.

Pötsch I, Ebner P, Deszcz L, et al. (2018) The anti-apoptosis ubiquitin E3 ligase XIAP promotes autophagosome-lysosome fusion during autophagy. bioRxiv:291294.

Salanenka Y, Verstraeten I, Löfke C, et al. (2018) Gibberellin DELLA signaling targets the retromer complex to redirect protein trafficking to the plasma membrane. Proc Natl Acad Sci USA 115(14):3716-21.

Schandry N, Jacobs JM, Szurek B, et al. (2018) A cautionary TALE: how plant breeding may have favoured expanded TALE repertoires in Xanthomonas. Mol Plant Pathol 19(6):1297-1301.

Sebastiana M, da Silva AB, Matos AR, et al. (2018) Ectomycorrhizal inoculation with Pisolithus tinctorius reduces stress induced by drought in cork oak. Mycorrhiza 28(3):247-258.

Seren Ü (2018) GWA-Portal: Genome-Wide Association Studies Made Easy. Methods Mol Biol 1761:303-19.

Shibata M, Breuer C, Kawamura A, et al. (2018) GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis. Development 145(3): dev159707.

Simon L, Rabanal FA, Dubos T, et al. (2018) Genetic and epigenetic variation in 5S ribosomal RNA genes reveals genome dynamics in Arabidopsis thaliana. Nucleic Acids Res 46(6):3019-33.

Smakowska-Luzan E, G. Adam Mott, ..., Belkhadir Y (2018) An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Nature 553(7688):342-6.

Stein JC, Yu Y, Copetti D, et al. (2018) Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nat Genet 50(2):285-96.

Tsuchimatsu T, Kakui H, Yamazaki M, et al. (2018) Adaptive Reduction of Male Gamete Number in a Selfing Species. bioRxiv:272757.

Uhse S and Djamei A (2018) Effectors of plant-colonizing fungi and beyond. PLoS Pathog 14(6):e1006992.

Uhse S, Pflug F, ..., Djamei A (2018) In vivo insertion pool sequencing identifies virulence factors in a complex fungal–host interaction. PLoS Biol:e2005129.

Aköz G and Nordborg M. (2018) Genome duplication and reorganization in Aquilegia. bioRxiv:407973.

Wójcik AM, Mosiolek M, Karcz J, et al. (2018) Whole Mount in situ Localization of miRNAs and mRNAs During Somatic Embryogenesis in Arabidopsis. Front Plant Sci 9:1277

Alonso C, Ramos-Cruz D, Becker C (2018) The role of plant epigenetics in biotic interactions. New Phytol [epub].

Capitao C, Shukla N, Wandrolova A, et al. (2018) Functional Characterization of SMG7 Paralogs in Arabidopsis thaliana. Front Plant Sci 9:1602.

Czedik-Eysenberg A, Seitner S, Ulrich Güldener, et al. (2018) The ‘PhenoBox’, a flexible, automated, open-source plantphenotyping solution. New Phytol [epub].

Filiault D, Ballerini ES, Mandakova T, et al. (2018) The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history. eLife:36426 preprint: bioRxiv:264101.

Gutzat R, Rembart K., Nussbaumer T. et al. (2018) Stage-specific transcriptomes and DNA methylomes indicate an early and transient loss of transposon control in Arabidopsis shoot stem cells. BioRxiv:430447.

Higo A, Kawashima T, Borg M et al. (2018) Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants. Nat Commun 9:5283.

Hofmann F, Schon MA, Nodine MD (2018) The embryonic transcriptome of Arabidopsis thaliana. bioRxiv:479584.

Lim TK, Ma Y, Berger F, et al. (2018) Acupuncture and Neural Mechanism in the Management of Low Back Pain-An Update. Medicines (Basel) 5(3):E63.

Mickute M, Nainyte M, Vasiliauskaite L, et al. (2018) Animal Hen1 2'-O-methyltransferases as tools for 3'-terminal functionalization and labelling of single-stranded RNAs. Nucleic Acids Res 46(17):e104.

Nagler M, Nägele T, Gilli C, et al. (2018) Eco-Metabolomics and Metabolic Modeling: Making the Leap From Model Systems in the Lab to Native Populations in the Field. Front Plant Sci 9:1556.

Osakabe A, Lorkovic ZJ, Kobayashi W, et al. (2018) Histone H2A variants confer specific properties to nucleosomes and impact on chromatin accessibility. Nucleic Acids Res 46(15):7675-85.

Richter J, Watson JM, Stasnik P, et al. (2018) Multiplex mutagenesis of four clustered CrRLK1L with CRISPR/Cas9 exposes their growth regulatory roles in response to metal ions. Sci Rep 8(1):12182.

Ristova D, Giovannetti M, Metesch K, et al. (2018) Natural Genetic Variation Shapes Root System Responses to Phytohormones in Arabidopsis. Plant J 96(2):468-481.

Seitner D, Uhse S, ..., Djamei A (2018) The Core Effector Cce1 is Required for Early Infection of Maize by Ustilago maydis. Mol Plant Pathol 19(10):2277-87.

Robert HS, Park C, Gutièrrez CL, et al. (2018) Maternal auxin supply contributes to early embryo patterning in Arabidopsis. Nat Plants 4(8):548-553.

Sasaki E, Frommlet F, Nordborg M (2018) GWAS with Heterogeneous Data: Estimating the Fraction of Phenotypic Variation Mediated by Gene Expression Data. G3 (Bethesda) 8(9):3059-68.

Schon MA, Kellner MJ, ..., Nodine MD (2018) NanoPARE: parallel analysis of RNA 5' ends from low-input RNA. Genome Res 28(12):1931-42

Tedeschi F, Rizzo P, Huong BTM et al. (2018) EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis. New Phytol 221(1):261-78.

Wibowo A, Becker C, Durr J, et al. (2018) Partial maintenance of organ-specific epigenetic marks during plant asexual reproduction leads to heritable phenotypic variation. Proc Natl Acad Sci USA 115(39):E9145-52.

Toal TW, Ron M, Gibson D, et al. (2018) Regulation of Root Angle and Gravitropism. G3 (Bethesda) [epub].

Ueda M and Berger F (2018) New cues for body axis formation in plant embryos. Curr Opin Plant Biol 47:16-21

Velicky P, Meinhardt G, Plessl K, et al. (2018) Genome amplification and cellular senescence are hallmarks of human placenta development. PLoS Genet 14(10):e1007698.

Wang H, Jiang D, Axelsson E, et al. (2018) LHP1 interacts with ATRX through plant-specific domains at specific loci targeted by PRC2. Mol Plant 11(8):1038-52.

Weng M, Becker C, Hildebrandt J, et al. (2018) Fine-Grained Analysis of Spontaneous Mutation Spectrum and Frequency in Arabidopsis thaliana. Genetics [epub].

Zess E, Jensen C, ..., Dagdas Y (2018) N-terminal β-strand underpins biochemical specialization of an ATG8 isoform. bioRxiv:453563.

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