Michael Nodine

2021

Arribas-Hernandez L, Rennie S, Koester T, et al. (2021) Principles of mRNA targeting and regulation via the Arabidopsis m6A-binding proteins ECT2 and ECT3. bioRxiv:2021.04.18.440342.

Arribas-Hernández L, Rennie S, Schon M, et al. (2021) The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation. eLife 10:e72377.

Borg M, Papareddy RK, Dombey R, et al. (2021) Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis. Elife 10:e61894.

Brodersen P, Arribas-Hernández L, ..., Nodine MD (2021)  The Arabidopsis m6A-binding proteins ECT2 and ECT3 bind largely overlapping mRNA target sets and influence target mRNA abundance, not alternative polyadenylation. bioRxiv:2021.08.01.454660.

Kao P, Schon MA, Mosiolek M, et al. (2021) Gene expression variation in arabidopsis embryos at single-nucleus resolution. Development 148(13):dev199589 preprint bioRxiv:2021.03.26.437151.

Lee YS, Maple R, Dürr J, et al. (2021) A transposon surveillance mechanism that safeguards plant male fertility during stress. Nat Plants 7(1):34-41.

Papareddy RK and Nodine MD (2021) Plant Epigenetics: Propelling DNA Methylation Variation across the Cell Cycle. Curr Biol 31(3):R129-31.

Papareddy RK, Páldi K, Smolka AD, et al. (2021) Repression of CHROMOMETHYLASE 3 Prevents Epigenetic Collateral Damage in Arabidopsis. eLife 10:e69396 preprint bioRxiv:2021.04.14.439682

Schon M, Baxter C, Xu C, et al. (2021) Antagonistic activities of cotranscriptional regulators within an early developmental window set FLC expression level. PNAS 118 (17) e2102753118.

Schon MA, Lutzmayer S, ..., Nodine MD (2022) Bookend: precise transcript reconstruction with end-guided assembly. Genome Biol 23(1):143 preprint bioRxiv:2022.01.12.476004.

2020

Gutierrez-Marcos J, Lee YS, Maple R, et al. (2020) A transposon surveillance mechanism that safeguards plant male fertility during stress. bioRxiv:2020.10.03.324764.

Gutzat R, Rembart K, Nussbaumer T, et al. (2020) Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns. EMBO J 39(20):e103667 preprint bioRxiv:430447.

Kao P and Nodine MD (2020) Profiling Transcriptomes of Manually Dissected Arabidopsis Embryos. Methods Mol Biol 2122:113-26.

Kao P and Nodine M (2020) Application of expansion microscopy on developing Arabidopsis seeds. Methods Cell Biol 161:181-195.

Nodine MD (2020) Parental contributions to early embryos. Nat Plants 6(11):1308.

Páldi K, Mosiolek M, Nodine MD (2020) Small RNA In Situ Hybridizations on Sections of Arabidopsis Embryos. Methods Mol Biol 2122:87-99.

Papareddy RK, Páldi K, ..., Nodine MD (2020) Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis. Genome Biol 21(1):251 preprint bioRxiv:076885

2019

Kao P and Nodine MD (2019) Transcriptional Activation of Arabidopsis Zygotes Is Required for Initial Cell Divisions. Sci Rep 9(1):17159 preprint bioRxiv:679035.

Plotnikova A, Kellner MJ, ..., Nodine MD (2019) MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis. Plant Cell 31(12):2929-46 preprint bioRxiv:633735.

2018

Hofmann F, Schon MA, Nodine MD (2019) The embryonic transcriptome of Arabidopsis thaliana. Plant Reprod 32(1):77-91 preprint: bioRxiv:479584.

Schon MA, Kellner MJ, ..., Nodine MD (2018) NanoPARE: parallel analysis of RNA 5' ends from low-input RNA. Genome Res 28(12):1931-42

Wójcik AM, Mosiolek M, Karcz J, et al. (2018) Whole Mount in situ Localization of miRNAs and mRNAs During Somatic Embryogenesis in Arabidopsis. Front Plant Sci 9:1277

2024

Lutzmayer S, Enugutti B, Nodine M (2017) Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data. Sci Reports 7:5913.

Racolta A, Nodine MD, Davies K et al. (2017) A Common Pathway of Root Growth Control and Response to CLE Peptides Through Two Receptor Kinases in Arabidopsis. Genetics 208(2):687-704.

Schon M and Nodine M (2017) Widespread Contamination of Arabidopsis Embryo and Endosperm Transcriptome Datasets. Plant Cell 29(4):608-17.

Wójcik AM, Nodine MD, Gaj MD (2017) miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci. 8:2024.

Ghosh Dastidar M, Mosiolek M, Bleckmann A, et al. (2016) Sensitive whole mount in situ localization of small RNAs in plants. Plant J 88(4):694-702.

Nodine MD (2016) Mobile small RNAs: Sperm-companion communication. Nat Plants 2:16041.

Vashisht D, Nodine MD (2014) MicroRNA functions in plant embryos. Biochem Soc Trans 42(2):352–7.

Nodine MD, Bartel DP (2012) Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos. Nature 482(7383):94-97

Nodine MD, Bryan AC, Racolta A, et al. (2011) A few standing for many: embryo receptor-like kinases. Trends Plant Sci 16(4):211-7.

Nodine MD, Bartel DP (2010) MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis. Genes Dev 24(23):2678-92.

Nodine MD, Tax FE (2008) Two receptor-like kinases required together for the establishment of Arabidopsis cotyledon primordia. Dev Biol 314(1):161-70.

Nodine MD, Yadegari R, Tax FE (2007) RPK1 and TOAD2 are two receptor-like kinases redundantly required for Arabidopsis embryonic pattern formation. Dev Cell 12(6):943-56.