Publications

Arribas-Hernandez L, Rennie S, Koester T, et al. (2021) Principles of mRNA targeting and regulation via the Arabidopsis m6A-binding proteins ECT2 and ECT3. bioRxiv:2021.04.18.440342.

Borg M, Papareddy RK, Dombey R, et al. (2021) Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis. Elife 10:e61894.

Brodersen P, Arribas-Hernández L, ..., Nodine MD (2021)  The Arabidopsis m6A-binding proteins ECT2 and ECT3 bind largely overlapping mRNA target sets and influence target mRNA abundance, not alternative polyadenylation. bioRxiv:2021.08.01.454660.

Kao P, Schon MA, Mosiolek M, et al. (2021) Gene expression variation in arabidopsis embryos at single-nucleus resolution. Development 148(13):dev199589 preprint bioRxiv:2021.03.26.437151.

Lee YS, Maple R, Dürr J, et al. (2021) A transposon surveillance mechanism that safeguards plant male fertility during stress. Nat Plants [epub].

Papareddy RK and Nodine MD (2021) Plant Epigenetics: Propelling DNA Methylation Variation across the Cell Cycle. Curr Biol 31(3):R129-31.

Papareddy RK, Páldi K, Smolka AD, et al. (2021) Repression of CHROMOMETHYLASE 3 Prevents Epigenetic Collateral Damage in Arabidopsis. eLife 10:e69396 preprint bioRxiv:2021.04.14.439682

Schon M, Baxter C, Xu C, et al. (2021) Antagonistic activities of cotranscriptional regulators within an early developmental window set FLC expression level. PNAS 118 (17) e2102753118.

Gutierrez-Marcos J, Lee YS, Maple R, et al. (2020) A transposon surveillance mechanism that safeguards plant male fertility during stress. bioRxiv:2020.10.03.324764.

Gutzat R, Rembart K, Nussbaumer T, et al. (2020) Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns. EMBO J 39(20):e103667 preprint bioRxiv:430447.

Kao P and Nodine MD (2020) Profiling Transcriptomes of Manually Dissected Arabidopsis Embryos. Methods Mol Biol 2122:113-26.

Kao P and Nodine M (2020) Application of expansion microscopy on developing Arabidopsis seeds. Methods Cell Biol 161:181-195.

Nodine MD (2020) Parental contributions to early embryos. Nat Plants 6(11):1308.

Páldi K, Mosiolek M, Nodine MD (2020) Small RNA In Situ Hybridizations on Sections of Arabidopsis Embryos. Methods Mol Biol 2122:87-99.

Papareddy RK, Páldi K, ..., Nodine MD (2020) Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis. Genome Biol 21(1):251 preprint bioRxiv:076885. 

Kao P and Nodine MD (2019) Transcriptional Activation of Arabidopsis Zygotes Is Required for Initial Cell Divisions. Sci Rep 9(1):17159 preprint bioRxiv:679035.

Plotnikova A, Kellner MJ, ..., Nodine MD (2019) MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis. Plant Cell (epub) preprint bioRxiv:633735.

Hofmann F, Schon MA, Nodine MD (2019) The embryonic transcriptome of Arabidopsis thaliana. Plant Reprod 32(1):77-91 preprint: bioRxiv:479584.

Schon MA, Kellner MJ, ..., Nodine MD (2018) NanoPARE: parallel analysis of RNA 5' ends from low-input RNA. Genome Res 28(12):1931-42. 

Wójcik AM, Mosiolek M, Karcz J, et al. (2018) Whole Mount in situ Localization of miRNAs and mRNAs During Somatic Embryogenesis in Arabidopsis. Front Plant Sci 9:1277. 

Lutzmayer S, Enugutti B, Nodine M (2017) Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data. Sci Reports 7:5913.

Racolta A, Nodine MD, Davies K et al. (2017) A Common Pathway of Root Growth Control and Response to CLE Peptides Through Two Receptor Kinases in Arabidopsis. Genetics 208(2):687-704.

Schon M and Nodine M (2017) Widespread Contamination of Arabidopsis Embryo and Endosperm Transcriptome Datasets. Plant Cell 29(4):608-17.

Wójcik AM, Nodine MD, Gaj MD (2017) miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci. 8:2024.

Ghosh Dastidar M, Mosiolek M, Bleckmann A, et al. (2016) Sensitive whole mount in situ localization of small RNAs in plants. Plant J 88(4):694-702.

Nodine MD (2016) Mobile small RNAs: Sperm-companion communication. Nat Plants 2:16041.

Vashisht D, Nodine MD (2014) MicroRNA functions in plant embryos. Biochem Soc Trans 42(2):352–7.

Nodine MD, Bartel DP (2012) Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos. Nature 482(7383):94-97. 

Nodine MD, Bryan AC, Racolta A, et al. (2011) A few standing for many: embryo receptor-like kinases. Trends Plant Sci 16(4):211-7.

Nodine MD, Bartel DP (2010) MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis. Genes Dev 24(23):2678-92.

Nodine MD, Tax FE (2008) Two receptor-like kinases required together for the establishment of Arabidopsis cotyledon primordia. Dev Biol 314(1):161-70.

Nodine MD, Yadegari R, Tax FE (2007) RPK1 and TOAD2 are two receptor-like kinases redundantly required for Arabidopsis embryonic pattern formation. Dev Cell 12(6):943-56.